

Bart Thomson
About
Junior Scientist
As a seasoned data scientist with a focus on (medical) imaging and sensor analysis, I have a proven track record of developing solutions for medical challenges using machine learning. My expertise includes proficiency in multiple programming languages (Python, R, Matlab), libraries (Numpy, Pandas, PyTorch), and technologies (Azure, Docker, Git).
Social Media:
Skills
Diffusion Tensor Imaging
Google TensorFlow
Matlab
Microsoft Azure
Python
R
Open for
fulltime
parttime
Work Experience
University of Zurich
2020-09 - 2023-12
PhD Candidate
Zürich
fulltime
PhD Candidate in the field of Medical Image Analysis, working with a team of neurosurgeons and engineers from diverse backgrounds. Responsible for organizing, conducting, and analyzing experiments. Scheduled to finish Dec 2023. • Development of machine learning and data analysis pipelines in high-dimensional projects related to fMRI, object detection and segmentation. • Driving insights in preclinical drug development studies. • Stakeholder management and data analysis in 4 (preclinical) projects.
Thomson Imaging Solutions
2021-02 -
Data Scientist & Founder
Zürich
parttime
Founded my own research software consulting firm focused on implementation of image analysis pipelines in a research setting. Responsible for the ideation, prototyping, and implementation. • Developed an automated quality control system based on CT imaging for beekeepers to reduce the number of parasites in their bee colonies. • Built a pipeline for automated nerve fiber analysis in optical microscopy to optimize diagnostics.
Netherlands Cancer Institute
2018-11 - 2020-09
Junior Scientist
Amsterdam, Netherlands
fulltime
Responsible for developing image processing algorithms focused on improving liver surgery, using deep learning. My main responsibilities included both prototyping and implementation of algorithm solutions. • Developed the foundational algorithms for image registration in software that is used during oncological surgery today. • Introduced machine learning models for data analysis.
Academic Experience
University of Zurich -
2020.09 - 2023.12
Philosophical Doctorate, PhD in Biomedicine
University of Twente -
2015.09 - 2019.09
Master of Science, MSc in Technical Medicine